OrangerV1, Main, Exploration, bibRecord, 001324

Flavonoid Biosynthesis Genes Putatively Identified in the Aromatic Plant Polygonum minus via Expressed Sequences Tag (EST) Analysis

Identifieur interne : 001324 ( Main/Exploration ); précédent : 001323; suivant : 001325

Flavonoid Biosynthesis Genes Putatively Identified in the Aromatic Plant Polygonum minus via Expressed Sequences Tag (EST) Analysis

Auteurs : Nur Diyana Roslan [Malaisie] ; Jastina Mat Yusop ; Syarul Nataqain Baharum ; Roohaida Othman [Malaisie] ; Zeti-Azura Mohamed-Hussein ; Ismanizan Ismail [Malaisie] ; Normah Mohd Noor ; Zamri Zainal [Malaisie]

Source :

International Journal of Molecular Sciences [ 1422-0067 ] ; 2012.

RBID : PMC:3317681

Abstract

P. minus is an aromatic plant, the leaf of which is widely used as a food additive and in the perfume industry. The leaf also accumulates secondary metabolites that act as active ingredients such as flavonoid. Due to limited genomic and transcriptomic data, the biosynthetic pathway of flavonoids is currently unclear. Identification of candidate genes involved in the flavonoid biosynthetic pathway will significantly contribute to understanding the biosynthesis of active compounds. We have constructed a standard cDNA library from P. minus leaves, and two normalized full-length enriched cDNA libraries were constructed from stem and root organs in order to create a gene resource for the biosynthesis of secondary metabolites, especially flavonoid biosynthesis. Thus, large-scale sequencing of P. minus cDNA libraries identified 4196 expressed sequences tags (ESTs) which were deposited in dbEST in the National Center of Biotechnology Information (NCBI). From the three constructed cDNA libraries, 11 ESTs encoding seven genes were mapped to the flavonoid biosynthetic pathway. Finally, three flavonoid biosynthetic pathway-related ESTs chalcone synthase, CHS (JG745304), flavonol synthase, FLS (JG705819) and leucoanthocyanidin dioxygenase, LDOX (JG745247) were selected for further examination by quantitative RT-PCR (qRT-PCR) in different P. minus organs. Expression was detected in leaf, stem and root. Gene expression studies have been initiated in order to better understand the underlying physiological processes.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3317681

DOI: 10.3390/ijms13032692
PubMed: 22489118
PubMed Central: 3317681

Affiliations:

Malaisie

Le document en format XML

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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Flavonoid Biosynthesis Genes Putatively Identified in the Aromatic Plant <italic>Polygonum minus</italic>
 via Expressed Sequences Tag (EST) Analysis</title>
<author><name sortKey="Roslan, Nur Diyana" sort="Roslan, Nur Diyana" uniqKey="Roslan N" first="Nur Diyana" last="Roslan">Nur Diyana Roslan</name>
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<author><name sortKey="Mohamed Hussein, Zeti Azura" sort="Mohamed Hussein, Zeti Azura" uniqKey="Mohamed Hussein Z" first="Zeti-Azura" last="Mohamed-Hussein">Zeti-Azura Mohamed-Hussein</name>
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<front><div type="abstract" xml:lang="en"><p><italic>P. minus</italic>
 is an aromatic plant, the leaf of which is widely used as a food additive and in the perfume industry. The leaf also accumulates secondary metabolites that act as active ingredients such as flavonoid. Due to limited genomic and transcriptomic data, the biosynthetic pathway of flavonoids is currently unclear. Identification of candidate genes involved in the flavonoid biosynthetic pathway will significantly contribute to understanding the biosynthesis of active compounds. We have constructed a standard cDNA library from <italic>P. minus</italic>
 leaves, and two normalized full-length enriched cDNA libraries were constructed from stem and root organs in order to create a gene resource for the biosynthesis of secondary metabolites, especially flavonoid biosynthesis. Thus, large-scale sequencing of <italic>P. minus</italic>
 cDNA libraries identified 4196 expressed sequences tags (ESTs) which were deposited in dbEST in the National Center of Biotechnology Information (NCBI). From the three constructed cDNA libraries, 11 ESTs encoding seven genes were mapped to the flavonoid biosynthetic pathway. Finally, three flavonoid biosynthetic pathway-related ESTs <italic>chalcone synthase</italic>
, CHS (JG745304), <italic>flavonol synthase</italic>
, FLS (JG705819) and <italic>leucoanthocyanidin dioxygenase</italic>
, LDOX (JG745247) were selected for further examination by quantitative RT-PCR (qRT-PCR) in different <italic>P. minus</italic>
 organs. Expression was detected in leaf, stem and root. Gene expression studies have been initiated in order to better understand the underlying physiological processes.</p>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Kumar, J" uniqKey="Kumar J">J. Kumar</name>
</author>
<author><name sortKey="Gupta, P K" uniqKey="Gupta P">P.K. Gupta</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="G Mez Galera, S" uniqKey="G Mez Galera S">S. Gómez-Galera</name>
</author>
<author><name sortKey="Pelacho, A M" uniqKey="Pelacho A">A.M. Pelacho</name>
</author>
<author><name sortKey="Gene, A" uniqKey="Gene A">A. Gené</name>
</author>
<author><name sortKey="Capell, T" uniqKey="Capell T">T. Capell</name>
</author>
<author><name sortKey="Christou, P" uniqKey="Christou P">P. Christou</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Azlim Almey, A A" uniqKey="Azlim Almey A">A.A. Azlim Almey</name>
</author>
<author><name sortKey="Ahmed Jalal Khan, C" uniqKey="Ahmed Jalal Khan C">C. Ahmed Jalal Khan</name>
</author>
<author><name sortKey="Syed Zahir, I" uniqKey="Syed Zahir I">I. Syed Zahir</name>
</author>
<author><name sortKey="Mustapha Suleiman, K" uniqKey="Mustapha Suleiman K">K. Mustapha Suleiman</name>
</author>
<author><name sortKey="Aisyah, M R" uniqKey="Aisyah M">M.R. Aisyah</name>
</author>
<author><name sortKey="Kamarul Rahim, K" uniqKey="Kamarul Rahim K">K. Kamarul Rahim</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Huda Faujan, N" uniqKey="Huda Faujan N">N. Huda-Faujan</name>
</author>
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Flavonoid Biosynthesis Genes Putatively Identified in the Aromatic Plant Polygonum minus via Expressed Sequences Tag (EST) Analysis

Flavonoid Biosynthesis Genes Putatively Identified in the Aromatic Plant Polygonum minus via Expressed Sequences Tag (EST) Analysis

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